Sample types

5 Sample types found

IMPAcTb, MIT_SRP, MetNet, MIT-Koch, Training/Test, CGR-Endo, Breakthrough_Cancer, Cancer_Systems_Biology_Consortium(CSBC), Shoulders Independent Projects, TestProject_250820

Sequencing Data

Attributes: UID (Text) *, Name (Text) , File_PrimaryData (Text) *, Scientist (Text) *, SampleCreationDate (Date) , Protocol (Text) , Link_PrimaryData (Text) , Parent (Text) , DataType (Text) , SequencingType (Text) , QCPlatform (Text) , QCAssay (Text) , Sequencer (Text) , ClusterDate (Date) , AnalyzedDate (Date) , CompleteDate (Date) , F_bp (Real number) , R_bp (Real number) , IndexInlineStartNT (Real number) , IndexInlineLength (Real number) , NumReads (Real number) , NumReadsUnits (Text) , MaxReads (Real number) , TotalReads (Real number) , NumAligned (Real number) , 20mers (Real number) , Primer (Text) , FlowLane (Text) , PrepUser (Text) , Contamination (Text) , Notes (Text) , ReagentManufacturer (Text) , ReagentCatalogNum (Text) , Publish_uri (Text) , LibraryStrategy (Text) , LibrarySource (Text) , LibrarySelection (Text) , ExpressionKit (Text) , ExtractedMolecule (Text) , Checksum_PrimaryData (Text) , File_SecondaryData (Text) , Link_SecondaryData (Text) , Checksum_SecondaryData (Text) , Genome (Text) , ReadLanePct (Real number) , UnalignedReads (Real number) , ContamPercent (Real number) , MappedPercent (Real number) , CDSPercent (Real number) , UTRPercent (Real number) , IntronPercent (Real number) , IntergenicPercent (Real number) , ExonIntronRatio (Real number) , 5_3UTR (Real number) , ExonIntergenicRatio (Real number) , SenseAntisenseRatio (Real number) , rRNAPercent (Real number) , Top30CountPercent (Real number) , GenesDetected (Real number) , GenesDetectedPercent (Real number) , LibraryDesign (Text) , Accession (Text) , Repository (Text) , Link_Reviewer (Text) , File_TertiaryData (Text) , Link_TertiaryData (Text) , Checksum_TertiaryData (Text) , Checksum_PrimaryType (Text) , RepositoryLink (Text) , Checksum_SecondaryType (Text) , RepositoryID (Text) , N50 (Real number) , N50Units (Text) , Yield (Real number) , YieldUnits (Text) , ModCall (Text) , MiniKnowVersion (Text) , Mode (Text) , FlowCellType (Text) , Link_QC (Text) , Link_Contamination (Text) , Link_SRA (Text) , Checksum_TertiaryType (Text) , SequencingFacility (Text) , SequencingFacilityLocation (Text) , SequencingFacilityLink (Text)

Tags: Not specified

Created: 25th Nov 2020 at 10:49

DNA

IMPAcTb, MIT_SRP, MetNet, MIT-Koch, Training/Test, CGR-Endo, Breakthrough_Cancer, Cancer_Systems_Biology_Consortium(CSBC), Shoulders Independent Projects, TestProject_250820

DNA Sample

Attributes: UID (Text) *, Name (Text) *, Protocol (Text) , Protocol2 (Text) , SampleCreationDate (Date) , Scientist (Text) *, Parent (Text) , Type (Text) , LibraryType (Text) , Volume (Real number) , VolumeUnits (Text) , Barcode (Text) , BarcodeType (Text) , Barcode2 (Text) , Barcode2Type (Text) , PrepDate (Date) , PoolDate (Date) , PeakFragmentSize (Real number) , PeakConcentration (Real number) , PeakConcUnits (Text) , Concentration (Real number) , ConcUnits (Text) , ConcType (Text) , InsertionSize (Real number) , NumPrepCycles (Real number) , Notes (Text) , Publish_uri (Text) , Lab (Text) , TubeNumber (Text) , WellID (Text) , AntibodyParent (Text) , BacteriaParent (Text) , Size (Text) , QC_Instrument (Text) , Link_QC (URI) , InputMassRNA (Text) , ShipDestination (Text)

Tags: Not specified

Created: 25th Nov 2020 at 10:16

BAC

IMPAcTb, MIT_SRP, MetNet, MIT-Koch, Training/Test, CGR-Endo, Breakthrough_Cancer, Cancer_Systems_Biology_Consortium(CSBC), Shoulders Independent Projects, TestProject_250820

Bacteria Sample

Attributes: UID (Text) *, Name (Text) *, Scientist (Text) *, SampleCreationDate (Date) , Protocol (Text) , Species (Text) , StorageSite (Text) , StorageLocation (Text) , StorageType (Text) , Parent (Text) , Substrain (Text) , SubstrainReference (Text) , Genotype (Text) , Phenotype (Text) , Morphology (Text) , Source (Text) , Culture (Text) , InoculumPrep (Text) , ODFrozen (Real number) , ODWavelength (Real number) , Notes (Text) , Publish_uri (Text) , Strain (Text) , TaxonomyID (Text) , GramStaining (Text) , Barcode (Text) , Qtag (Text) , Lab (Text) , Link_Sequence (Text)

Tags: Not specified

Created: 18th Jun 2020 at 14:38

CEL

IMPAcTb, MIT_SRP, MetNet, MIT-Koch, Training/Test, CGR-Endo, Breakthrough_Cancer, Cancer_Systems_Biology_Consortium(CSBC), Shoulders Independent Projects, TestProject_250820

Cell Sample

Attributes: UID (Text) *, Name (Text) *, StorageLocation (Text) , StorageSite (Text) , SampleCreationDate (Date) , Protocol (Text) , Species (Text) , CellLine (Text) , Reference (Text) , Genotype (Text) , Phenotype (Text) , Source (Text) , SourceFacility (Text) , Media (Text) , StorageType (Text) , ValidationQuality (Text) , ValidationMethod (Text) , TreatmentType (Text) , Treatment1 (Text) , Treatment1Reference (Text) , Treatment1Dose (Real number) , Treatment1DoseUnits (Text) , TreatmentDoseTime (Real number) , TreatmentTimeUnits (Text) , TreatmentRoute (Text) , Protocol_Treatment (Text) , Parent (Text) , Scientist (Text) *, Type (Text) , CellCount (Text) , ReagentBrand (Text) , Reagent (Text) , QC (Text) , Notes (Text) , Publish_uri (Text) , BioSampleAccession (Text) , Treatment2 (Text) , Treatment2Dose (Text) , Treatment2DoseUnits (Text) , CellLineage (Text) , Treatment2Reference (Text) , AntibodyParent (Text) , Tissue (Text) , Disease (Text) , Catalog# (Text) , Link_Catalog# (Text) , MediaSource (Text) , Morphology (Text) , Mutation (Text) , GrowthConditions (Text) , Passages (Text) , RepositoryLink (Text) , EthicsApproval (Text) , AssayType (Text) , Strain (Text) , TaxonomyID (Text) , CellConcentration (Text) , CellConcentrationUnits (Text) , CellCount_Macrophage (Text) , CellCount_File (Text) , CellCount_Link (Text) , CellCounter (Text) , ExposureTime (Text) , MediaBase (Text) , MediaSupplements (Text) , DissociationReagents (Text) , DissociationConditions (Text) , MinSeedingDensity (Text) , CultureFormat (Text) , PassageNotes (Text) , MaxPassage (Text)

Tags: Not specified

Created: 14th Feb 2020 at 14:17

MUS

IMPAcTb, MIT_SRP, MetNet, MIT-Koch, Training/Test, CGR-Endo, Breakthrough_Cancer, Cancer_Systems_Biology_Consortium(CSBC), Shoulders Independent Projects, TestProject_250820

Mouse

Attributes: UID (Text) *, Name (Text) *, Scientist (Text) *, DateOfBirth (Text) , Sex (Text) , Strain (Text) , Link_StrainReference (Text) , Genotype (Text) , Phenotype (Text) , StorageType (Text) , StorageLocation (Text) , StorageSite (Text) , Source (Text) , SourceFacility (Text) , ParentM (Text) , ParentF (Text) , Notes (Text) , Cohort (Text) , Study (Text) , Classification (Text) , SacrificeDate (Text) , Treatment1Type (Text) , Treatment1 (Text) , Treatment1Date (Text) , Treatment1Parent (Text) , Treatment1Route (Text) , Treatment1Dose (Real number) , Treatment1DoseUnits (Text) , Treatment1Reference (Text) , Treatment1Time (Real number) , Treatment1TimeUnits (Text) , Protocol_Treatment1 (Text) , Treatment2Type (Text) , Treatment2 (Text) , Treatment2Date (Text) , Treatment2Parent (Text) , Treatment2Route (Text) , Treatment2Dose (Real number) , Treatment2DoseUnits (Text) , Treatment2Reference (Text) , Treatment2Time (Real number) , Treatment2TimeUnits (Text) , Protocol_Treatment2 (Text) , Treatment3Type (Text) , Treatment3 (Text) , Treatment3Date (Text) , Treatment3Route (Text) , Treatment3Dose (Text) , Treatment3DoseUnits (Text) , DiseaseStage (Text) , DiseaseReference (Text) , Disease (Text) , Publish_uri (Text) , Treatment3Parent (Text) , AlternativeIDs (Text) , Vendor (Text) , SacrificeDescription (Text) , SurvivalTime (Text) , MortalityObservation (Text) , Treatment1DoseRule (Text) , Treatment2DoseRule (Text) , Treatment3DoseRule (Text) , Protocol (Text) , Group_InCohort (Text) , Provider (Text) , ProviderProduct# (Text) , CountryOfOrigin (Text) , Treatment4 (Text) , Treatment4Type (Text) , Treatment4Date (Text) , Treatment4Parent (Text) , Treatment4Route (Text) , Treatment4Dose (Text) , Treatment4DoseUnits (Text) , Link_BodyWeight (Text)

Tags: Not specified

Created: 7th Nov 2019 at 14:17

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